Lectures content

The schedule of the classes in the Bio-Modeling Spring 2020 course is shown below. Rooms are in the Snellius Building. Slides from the lectures are also provided. They are intended for this 2020 LIACS course only and should be used for that purpose. Please report remarks and/or errors. Thanks in advance.

From the table below lecture notes can be downloaded as PDF files by clicking the relevant links. For some of the slides and materials, you need to be enrolled to the course in Blackboard. If you are not logged in to Blackboard then you are asked for a username and password. Enter your ULCN credentials (connected to student number) in this login field.

The Reading column indicates the material or tasks that we expect you to start to examine from the given lecture, possibly as a form of homework that is due for the next session. A different due date may be given.

# Sort descending Lecture time Room Content Reading Slides and additional material
01 04-02-2020 14:15 - 16:00 408 Introduction of Biomodeling (Fons Verbeek; Lu Cao)
02 11-02-2020 14:15 - 16:00 408 Basic Petri Nets (Lu Cao) Recommended: Modeling in Systems Biology: The Petri Net Approach chapters 1, (2), 3
03 18-02-2020 14:15 - 16:00 TBA Computer practical 1 Try the Take Home Exercise Snoopy packages [URL]
04 25-02-2020 15.30 - 17.15 408 Extended Petri Nets (Lu Cao)
05 03-03-2020 14:15 - 16:00 TBA Computer practical 2
06 10-03-2020 14:15 - 16:00 408 Bio-model Abstraction (Henning Basold)
07 17-03-2020 14:15 - 15:00 408 Case study 1: dr. Alireza Mashaghi Tabari (LACDR)
08 17-03-2020 15:15 - 16:00 408 Case study 2: TBA
09 24-03-2020 14:15 - 15:00 408 Case study 3: dr. Diederik Kuster (AUMC)
10 24-03-2020 15:15 - 16:00 408 Case study 4: TBA